species:   Rhsol
pid:       PID0629
parent:    Rhi-milR-49
paralog:   
locus:     KB317790.1:1714-1824
matures:   ['CAUUGAUUGGUUUGGCGUUGGACC', 'UUUAGUGCUGAACCAAUCAAUGUC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317790.1:1714-1824

0 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

                *************************                                              ************************
CCUCAGUUACAUUGUAAACACAUUGAUUGGUUUGGCGUUGGACCAAUCAAUGUAAGUGAUCAUUGAGUUACAAGCACAUCAAUUGGUUUAGUGCUGAACCAAUCAAUGUCA
...................((((((((((((((((((((((((((((..((((..(((((......)))))....))))..))))))))))))))))))))))))))))..
--------------------CAUUGAUUGGUUUGGCGUUGGACC------------------------------------------------------------------- l=24 a=0 c
--------------------------------------------------------------------------------------UUUAGUGCUGAACCAAUCAAUGUC- l=24 a=0 c*
------------------CACAUUGAUUGGUUUGGCGUUGG---------------------------------------------------------------------- l=23 a=1 ma
-----------------------------------------------------------------------------------------AGUGCUGAACCAAUCAAUGUCA l=22 a=0 ma*

-----------------ACACAUUGAUUGGUUUGGCGcUG----------------------------------------------------------------------- l=23 a=1 
------------------CACAUUGAUUGGUUUGGCGUUGG---------------------------------------------------------------------- l=23 a=1 (ma)
---------------------------------------------------------------UGAGUUACAAGCACAUCAAUUGGU------------------------ l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-110111111100
fn-011
